shesmu

Vidarr Plugin

Vidarr is a bioinformatics analysis provenance system.

To integrate Shesmu with a Vidarr server, create a configuration file ending in .vidarr as follows:

{
  "defaultMaxSubmissionDelay": null,
  "url": "http://vidarr:8000"
}

This will populate Shesmu with target + workflow combinations from the Vidarr server. They will be updated every 10 minutes.

The "defaultMaxSubmissionDelay" determines if actions that might be stale should be submitted to Vidarr. If null, worklow runs will always be submitted. If a number, in seconds, is given, then the action must have been (re-)generated by an olive in that window to be submitted to Vidarr. If that window is exceeded, they will be run as dry-run.